I've knocked about 50 off that list in the last couple of weeks (mostly SCDC and KICA). I still think it'd be easier to periodically rerun the script since there can be a lot of changes in the database. One thing we could do to make things easier for you is create a function that prints out all the catalog numbers in a single list.
Another thing you can do is strip off everything after the tilde (~) for comparison. You could also replace all spaces with "-" or vice versa, to catch a few other formatting differences.
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